SNP Profiles of ICS 39 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AA	TT	CC	GG	GG	AT	AC	CT	AG	GT	AG	TT	AA
1._RUQ_1089	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
2._RUQ_1089	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
3._GC-01-85-5-02	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
4._GC-01-085-5-02	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
5._GC-01-85-5-02	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
6._GC-01-85-5-02	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
7._GC-01-85-5-02	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
8._GC-01-085-5-02	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
9._GC-01-085-5-02	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
10._ICS_39_Fld#_30_Plt#_2	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
11._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
12._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
13._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
14._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
15._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
16._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
17._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
18._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_
19._ICS_39	_	_	_	_	_	_	_	AC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	AC	CC	AA	CC	CC	AG	GG	TT	AA	CC	TT	AG	CC
1._RUQ_1089	_	_	_	_	_	CC	_	GG	_	AA	_	_	_	_
2._RUQ_1089	GG	_	_	_	_	CC	_	GG	_	AA	GG	_	_	_
3._GC-01-85-5-02	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
4._GC-01-085-5-02	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
5._GC-01-85-5-02	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
6._GC-01-85-5-02	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
7._GC-01-85-5-02	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
8._GC-01-085-5-02	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
9._GC-01-085-5-02	AG	_	_	_	_	CC	_	CC	_	AC	CC	_	_	_
10._ICS_39_Fld#_30_Plt#_2	AG	_	_	_	_	CC	_	CG	_	AC	GG	_	_	_
11._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
12._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
13._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
14._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
15._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
16._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
17._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
18._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_
19._ICS_39	_	_	_	_	_	CC	_	CC	_	AC	_	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CG	TT	GG	GG	TT	TT	AC	AT	TT	CC	GG	CG	AG
1._RUQ_1089	AA	_	_	GG	_	_	_	_	_	_	CC	_	_	AG
2._RUQ_1089	_	_	_	CC	GG	_	_	AC	_	CC	GG	GG	_	AG
3._GC-01-85-5-02	GG	_	_	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
4._GC-01-085-5-02	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
5._GC-01-85-5-02	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
6._GC-01-85-5-02	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
7._GC-01-85-5-02	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
8._GC-01-085-5-02	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
9._GC-01-085-5-02	GG	_	CT	GT	AG	_	_	CC	_	GG	CG	GG	_	AA
10._ICS_39_Fld#_30_Plt#_2	_	_	_	AA	AG	_	_	AC	_	CC	CG	GG	_	AA
11._ICS_39	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
12._ICS_39	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
13._ICS_39	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
14._ICS_39	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
15._ICS_39	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
16._ICS_39	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
17._ICS_39	GG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
18._ICS_39	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA
19._ICS_39	AG	_	_	GT	_	_	_	_	_	_	CG	_	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	CT	AA	CC	AG	TT	CC	GG	AA	TT	GG	TT	AG	GG
1._RUQ_1089	_	_	_	_	AG	_	CC	_	_	TT	_	_	_	_
2._RUQ_1089	_	_	_	_	AG	_	_	_	_	AA	_	_	_	_
3._GC-01-85-5-02	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
4._GC-01-085-5-02	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
5._GC-01-85-5-02	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
6._GC-01-85-5-02	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
7._GC-01-85-5-02	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
8._GC-01-085-5-02	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
9._GC-01-085-5-02	CT	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
10._ICS_39_Fld#_30_Plt#_2	_	_	_	_	AA	_	_	_	_	AA	_	_	_	_
11._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
12._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
13._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
14._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
15._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
16._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
17._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
18._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_
19._ICS_39	_	_	_	_	AA	_	CT	_	_	GT	_	_	_	_

	57	58	59
_Input profile	CC	TT	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1089	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1089	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-85-5-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-085-5-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-85-5-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-85-5-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-85-5-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-085-5-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-085-5-02	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_39_Fld#_30_Plt#_2	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_39	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._ICS_39	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._ICS_39	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._ICS_39	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._ICS_39	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._ICS_39	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._ICS_39	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._ICS_39	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._ICS_39	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_39 RUQ_1089

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._ICS_39 RUQ_1089

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_39 RUQ_1089

64.7 %
17 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

3._ICS_39 GC-01-85-5-02

57.5 %
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15

Notes: PL15 FP4

4._ICS_39 GC-01-085-5-02

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

5._ICS_39 GC-01-85-5-02

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14

Notes: PL14 FP3

6._ICS_39 GC-01-85-5-02

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8

Notes: PL8 FP1

7._ICS_39 GC-01-85-5-02

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5

Notes: PL5 FP2

8._ICS_39 GC-01-085-5-02

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

9._ICS_39 GC-01-085-5-02

57.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16

10._ICS_39 ICS_39_Fld#_30_Plt#_2

55.9 %
17 shared markers

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USDA-TARS, United States of America

Location: Field: 30, Tree: 2

11._ICS_39

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 9

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._ICS_39

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 12

Dapeng Zhang, 2016

13._ICS_39

53.8 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1502 16

Dapeng Zhang, 2016

14._ICS_39

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL14 F

Dapeng Zhang, 2016

15._ICS_39

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL15 F

Dapeng Zhang, 2016

16._ICS_39

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL5 FP

Dapeng Zhang, 2016

17._ICS_39

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1502 PL8 FP

Dapeng Zhang, 2016

18._ICS_39

53.8 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 9 C0200 2A

Dapeng Zhang, 2016

19._ICS_39

53.8 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E361 T3

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527